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phyndr (version 0.1.0)

phyndr_topology: phyndr for topo trees

Description

phyndr for topo trees

Usage

phyndr_topology(phy, data_species, topology)

Arguments

phy
An ape phylogeny. The tree must be ultrametric and this is enforced on entry.
data_species
A vector of species names for which we have trait data. Species names in both the tree and in this vector must be separated with underscores, not with spaces.
topology
A topological tree used to determine patterns of relatedness among species in phy. The better resolved this tree is and the better the overlap it has with phy and data_species the more useful this will be. Branch length information is not used.