labelnodes

text string or vector to be used as labels.

text

node numbers (indices) for the labels.

node

logical value indicating whether or not nodes should be supplied interactively. (I.e., by clicking on the nodes.)

interactive

shape to plot around the plotted node label(s).

shape

Function adds node labels to a plotted object of class <code>"phylo"</code>. The nodes to be labels can be selected interactively by the user (i.e., by clicking on the corresponding nodes of the plotted tree).

utilities

plotting

A wide range of functions for phylogenetic analysis. Functionality is concentrated in phylogenetic comparative biology, but also includes a diverse array of methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees and data. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, simulation of phylogenies and data, and multivariate analysis. There are a broad range of plotting methods for phylogenies and comparative data which include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, there are a number of functions for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data not covered by other packages. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for estimating supertrees or consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

labelnodes: Function to interactively label nodes of a plotted tree

Description

Usage

Arguments

Value

References

See Also