roundPhylogram

an object of class "phylo" or "multiPhylo" containing one or multiple phylogenies.

tree

relative font size for tip labels.

fsize

font type - options are <code>"reg"</code>, <code>"i"</code> (italics), <code>"b"</code> (bold), or <code>"bi"</code> (bold-italics).

ftype

vector containing the margins for the plot to be passed to <code><a rd-options="" href="/link/par?package=phytools&version=0.7-20" data-mini-rdoc="phytools::par">par</a></code>. If not specified, the default margins are [0.1,0.1,0.1,0.1].

offset

plotting direction. Only the option <code>direction="rightwards"</code> is presently supported.

direction

plot type. Can be <code>"phylogram"</code> or <code>"cladogram"</code>. If <code>type="cladogram"</code> then the branch lengths are not necessary (and, indeed, are not used).

type

xlim

ylim

Function plots one or multiple round phylograms.

phylogenetics

comparative method

plotting

A wide range of functions for phylogenetic analysis. Functionality is concentrated in phylogenetic comparative biology, but also includes a diverse array of methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees and data. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, simulation of phylogenies and data, and multivariate analysis. There are a broad range of plotting methods for phylogenies and comparative data which include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, there are a number of functions for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data not covered by other packages. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for estimating supertrees or consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Liam Revell

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

roundPhylogram function

vector containing the margins for the plot to be passed to <code><a rd-options='' href='par'>par</a></code>. If not specified, the default margins are [0.1,0.1,0.1,0.1].

roundPhylogram: Plot a round phylogram

Description

Usage

Arguments

Value

Details

References

See Also