splitplotTree

plotTree.splits

tree

relative font size for tip labels.

fsize

font type - options are <code>"reg"</code>, <code>"i"</code> (italics), <code>"b"</code> (bold), or <code>"bi"</code> (bold-italics).

ftype

relative vertical position for splitting the tree (between 0 &amp; 1).

split

whether or not to plot the split tree in a new window. If <code>FALSE</code> then the tree will be plotted in two columns within the same plotting window.

new.window

for <code>plotTree.splits</code> relative positions (from 0 to 1) to split the tree across pages or devices.

splits

filename if saving to a PDF file is desired. Otherwise will plot to the default plotting device.

file

function to be executed on each plotted page. For instance, might be: <code>function()</code> <code>cladelabels()</code> if clade labels are desired.

other arguments to be passed to <code><a rd-options="" href="/link/plotTree?package=phytools&version=0.7-70" data-mini-rdoc="phytools::plotTree">plotTree</a></code>.

Function plots a tree in two columns or windows.

phylogenetics

plotting

A wide range of functions for phylogenetic analysis. Functionality is concentrated in phylogenetic comparative biology, but also includes numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees and data. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, simulation of phylogenies and data, and multivariate analysis. There are a broad range of plotting methods for phylogenies and comparative data which include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, there are a number of functions for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data not covered by other packages. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for estimating supertrees or consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Liam Revell

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

splitplotTree function

other arguments to be passed to <code><a rd-options='' href='plotTree'>plotTree</a></code>.

splitplotTree: Plots a phylogeny in two columns

Description

Usage

Arguments

Value

References

See Also