get.treepos

getnode

for <code>get.treepos</code>, a logical value indicating whether or not to print an instructional message.

message

Both functions return the phylogenetic position of a mouse click on a plotted tree.	
<code>get.treepos</code> returns the index of the node at the end of the selected edge, along with the branch distance to that node.	
<code>getnode</code> simply returns the closest node to the user mouse click.

utilities

plotting

A wide range of functions for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and data, for continuous, discrete, and multivariate characters. A broad range of plotting methods for phylogenies and comparative data include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for computing consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Liam Revell

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

get.treepos function

<dl>	<dt>message</dt>
<dd>for <code>get.treepos</code>, a logical value indicating whether or not to print an instructional message.</dd>	<dt>...</dt>
<dd>optional arguments.</dd></dl>

Arguments

Liam Revell <a href="/link/liam.revell%40umb.edu?package=phytools&version=1.0-3" data-mini-rdoc="phytools::liam.revell@umb.edu">liam.revell@umb.edu</a>

Author

Get position or node of a plotted tree interactively — get.treepos

<dl>

	<dt>message</dt>
<dd>for <code>get.treepos</code>, a logical value indicating whether or not to print an instructional message.</dd>

	<dt>...</dt>
<dd>optional arguments.</dd>

</dl>

Liam Revell <a href='mailto:liam.revell@umb.edu'>liam.revell@umb.edu</a>

get.treepos: Get position or node of a plotted tree interactively

Description

Usage

Value

Arguments

Author

Details

References