labelnodes

text string or vector to be used as labels.

text

node numbers (indices) for the labels.

node

logical value indicating whether or not nodes should be supplied interactively. (I.e., by clicking on the nodes.)

interactive

shape to plot around the plotted node label(s).

shape

Function adds node labels to a plotted object of class <code>"phylo"</code>. The nodes to be labels can be selected interactively by the user (i.e., by clicking on the corresponding nodes of the plotted tree).

utilities

plotting

A wide range of functions for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and data, for continuous, discrete, and multivariate characters. A broad range of plotting methods for phylogenies and comparative data include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for computing consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Liam Revell

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

labelnodes function

<dl>	<dt>text</dt>
<dd>text string or vector to be used as labels.</dd>	<dt>node</dt>
<dd>node numbers (indices) for the labels.</dd>	<dt>interactive</dt>
<dd>logical value indicating whether or not nodes should be supplied interactively. (I.e., by clicking on the nodes.)</dd>	<dt>shape</dt>
<dd>shape to plot around the plotted node label(s).</dd>	<dt>...</dt>
<dd>optional arguments.</dd></dl>

Arguments

Liam Revell <a href="/link/liam.revell%40umb.edu?package=phytools&version=1.0-3" data-mini-rdoc="phytools::liam.revell@umb.edu">liam.revell@umb.edu</a>

Author

Function to interactively label nodes of a plotted tree — labelnodes

<dl>

	<dt>text</dt>
<dd>text string or vector to be used as labels.</dd>

	<dt>node</dt>
<dd>node numbers (indices) for the labels.</dd>

	<dt>interactive</dt>
<dd>logical value indicating whether or not nodes should be supplied interactively. (I.e., by clicking on the nodes.)</dd>

	<dt>shape</dt>
<dd>shape to plot around the plotted node label(s).</dd>

	<dt>...</dt>
<dd>optional arguments.</dd>

</dl>

Liam Revell <a href='mailto:liam.revell@umb.edu'>liam.revell@umb.edu</a>

labelnodes: Function to interactively label nodes of a plotted tree

Description

Usage

Value

Arguments

Author

References

See Also