getStates

This function gets the states from the nodes or tips of a mapped tree (e.g., <code>make.simmap</code>).

utilities

phylogenetics

discrete character

A wide range of functions for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and data, for continuous, discrete, and multivariate characters. A broad range of plotting methods for phylogenies and comparative data include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for computing consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Liam Revell

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

getStates function

<dl>	<dt>tree</dt>
<dd>is a modified object of class <code>"phylo"</code> or <code>"multiPhylo"</code>.</dd>	<dt>type</dt>
<dd>mode indicating whether to get states at the nodes (<code>type="nodes"</code>) or the tips (<code>type="tips"</code>) of the tree.</dd></dl>

Arguments

Liam Revell <a href="/link/liam.revell%40umb.edu?package=phytools&version=1.2-0" data-mini-rdoc="phytools::liam.revell@umb.edu">liam.revell@umb.edu</a>

Author

Get the states at nodes or tips from a mapped tree — getStates

<dl>

	<dt>tree</dt>
<dd>is a modified object of class <code>"phylo"</code> or <code>"multiPhylo"</code>.</dd>

	<dt>type</dt>
<dd>mode indicating whether to get states at the nodes (<code>type="nodes"</code>) or the tips (<code>type="tips"</code>) of the tree.</dd>

</dl>

Liam Revell <a href='mailto:liam.revell@umb.edu'>liam.revell@umb.edu</a>

getStates: Get the states at nodes or tips from a mapped tree

Description

Usage

Value

Arguments

Author

References

See Also