sim.corrs

This function conducts BM simulation on a tree with multiple rates and/or multiple evolutionary correlations between characters. If <code>vcv</code> is a single matrix, instead of a list of matrices, <code>sim.corrs</code> will simulate multivariate BM with a single rate matrix.

Simulation

phylogenetics

comparative method

continuous character

A wide range of functions for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and data, for continuous, discrete, and multivariate characters. A broad range of plotting methods for phylogenies and comparative data include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for computing consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Liam Revell

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

sim.corrs function

<dl>	<dt>tree</dt>
<dd>is a phylogenetic tree in 'phylo' format; or a modified 'phylo' tree with a mapped discrete character.</dd>	<dt>vcv</dt>
<dd>is a square covariance matrix or named list of matrices (one for each mapped state on the tree).</dd>	<dt>anc</dt>
<dd>optional vector of values for the root state.</dd>	<dt>internal</dt>
<dd>logical value indicating whether to return states at internal nodes.</dd> </dl>

Arguments

Liam Revell <a href="/link/liam.revell%40umb.edu?package=phytools&version=1.2-0" data-mini-rdoc="phytools::liam.revell@umb.edu">liam.revell@umb.edu</a>

Author

Multivariate Brownian simulation with multiple correlations and rates — sim.corrs

<dl>

	<dt>tree</dt>
<dd>is a phylogenetic tree in 'phylo' format; or a modified 'phylo' tree with a mapped discrete character.</dd>

	<dt>vcv</dt>
<dd>is a square covariance matrix or named list of matrices (one for each mapped state on the tree).</dd>

	<dt>anc</dt>
<dd>optional vector of values for the root state.</dd>

	<dt>internal</dt>
<dd>logical value indicating whether to return states at internal nodes.</dd>

 </dl>

Liam Revell <a href='mailto:liam.revell@umb.edu'>liam.revell@umb.edu</a>

sim.corrs: Multivariate Brownian simulation with multiple correlations and rates

Description

Usage

Value

Arguments

Author

References

See Also