splitEdgeColor

This function splits the vertical line colors to match the daughter edges when the daughters have different states. Mostly to be used with trees generated using <code>paintBranches</code> or <code>paintSubTree</code>. Also used internally by <code>plotSimmap</code>.

phylogenetics

comparative method

plotting

A wide range of functions for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and data, for continuous, discrete, and multivariate characters. A broad range of plotting methods for phylogenies and comparative data include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for computing consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Liam Revell

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

splitEdgeColor function

<dl>	<dt>tree</dt>
<dd>object of class <code>"simmap"</code>.</dd>	<dt>colors</dt>
<dd>named vector of colors to be used for plotting.</dd>	<dt>lwd</dt>
<dd>width of the plotted lines.</dd></dl>

Arguments

Liam Revell <a href="/link/liam.revell%40umb.edu?package=phytools&version=1.2-0" data-mini-rdoc="phytools::liam.revell@umb.edu">liam.revell@umb.edu</a>

Author

Split edge colors when descendant edges have different mapped states — splitEdgeColor

<dl>

	<dt>tree</dt>
<dd>object of class <code>"simmap"</code>.</dd>

	<dt>colors</dt>
<dd>named vector of colors to be used for plotting.</dd>

	<dt>lwd</dt>
<dd>width of the plotted lines.</dd>

</dl>

Liam Revell <a href='mailto:liam.revell@umb.edu'>liam.revell@umb.edu</a>

splitEdgeColor: Split edge colors when descendant edges have different mapped states

Description

Usage

Arguments

Author

References

See Also