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phytools (version 2.3-0)

allFurcTrees: Generate all bi- and multifurcating unrooted trees

Description

This function creates all possible unrooted bi- and multifurcating trees and returns a list of trees as an object of class "multiPhylo".

Usage

allFurcTrees(n, tip.label=NULL, to.plot=TRUE)

Value

A list of trees as an object of class "multiPhylo".

Arguments

n

an integer giving the desired number of species.

tip.label

an optional vector of length n containing the tip names.

to.plot

an optional logical value indicating whether or not to plot the trees.

Author

Liam Revell liam.revell@umb.edu

Details

This function should be used with extreme caution for n greater than about 8, as in this case the number of possible trees is extremely large.

References

Felsenstein, J. 2004. Inferring Phylogenies. Sinauer.

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

add.everywhere, exhaustiveMP

Examples

Run this code
## compute & plot all bi- and multifurcating
## trees for six taxa
trees<-allFurcTrees(n=6)
par(mfrow=c(16,15))
nulo<-sapply(trees,plot,type="unrooted",
    no.margin=TRUE)
par(mfrow=c(1,1))

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