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phytools (version 2.3-0)

as.Qmatrix: Convert a fitted Mk model to a Q-matrix

Description

Extracts a Q-matrix from a fitted Mk model.

Usage

as.Qmatrix(x, ...)
# S3 method for fitMk
as.Qmatrix(x, ...)
# S3 method for Qmatrix
plot(x, ...)
# S3 method for Qmatrix
print(x, ...)

Value

An object of class "Qmatrix".

plot.Qmatrix invisibly returns the coordinates of vertices of the plotted Q-matrix.

Arguments

x

fitted Mk model. (For instance, an object of class "fitMk".) In the case of print.Qmatrix, an object of class "Qmatrix".

...

optional arguments.

Author

Liam Revell liam.revell@umb.edu

Details

This function extracts a Q-matrix (in the form of an object of class "Qmatrix") from a fitted Mk model.

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

fitMk