sample2matrix

Phylocom sample formatted data frame, a data frame with three columns:<ul>
<li>Column 1 Community name</li>
<li>Column 2 Species abundance</li>
<li>Column 3 Species name</li>
</ul>

Convert a Phylocom database-format sample to community data matrix.

Functions for phylocom integration, community analyses, null-models, traits and evolution. Implements numerous ecophylogenetic approaches including measures of community phylogenetic and trait diversity, phylogenetic signal, estimation of trait values for unobserved taxa, null models for community and phylogeny randomizations, and utility functions for data input/output and phylogeny plotting. A full description of package functionality and methods are provided by Kembel et al. (2010) <doi:10.1093/bioinformatics/btq166>.

Steven W Kembel

sample2matrix: Convert Phylocom sample to community data matrix

Description

Usage

Arguments

References