data(chromosome17)
## calculate dependency models over chromosome 17
model17 <- screen.cgh.mrna(geneExp, geneCopyNum, windowSize = 10, chr
= 17)
model17
## Information of the dependency model which has the highest dependency score
topGenes(model17, 1)
## Finding a dependency model by its name
findModel(model17, "ENSG00000129250")
## Information of the first dependency model
model17[[1]]
#Plotting
plot(model17)
# genes in p arm with the highest dependency scores
topGenes(model17[['p']], 5)
Run the code above in your browser using DataLab