pint (version 1.22.0)

GeneDependencyModel-class: Class "GeneDependencyModel"

Description

A Genomic Dependency model for two data sets

Objects from the Class

Used to represent individual dependency models for screening inside ChromosomeModels.

Extends

Class DependencyModel directly.

See Also

For calculation of dependency models for chromosomal arm, chromosome or genome: screen.cgh.mrna. Dependency models for whole chromosome: ChromosomeModels. Dependency models for whole genome: GenomeModels. For plotting dependency scores see dependency score plotting.

Examples

data(chromosome17)

# First genomic dependency model from screening chromosomal arm
models <- screen.cgh.mrna(geneExp, geneCopyNum, 10, chr=17, arm='p')
model <- models[[1]]

# Printing information of the model
model

# Latent variable Z
getZ(model, geneExp,geneCopyNum)

# Contributions of samples and variables to model
plot(model,geneExp,geneCopyNum)