geneCopyNum


  Preprocessed gene copy number (aCGH) data for 51 patients in
  chromosome 17.


datasets

Pairwise data integration for functional genomics, including tools for DNA/RNA/miRNA dependency screens.

OlliPekka Huovilainen

pint

Pairwise INTegration of functional genomics data

geneCopyNum function

A list which contain the following data:
 <dl> <dt>data</dt><dd> gene copy number data in matrix form. Genes are in
 columns and samples in rows</dd> <dt>info</dt><dd> Data frame which contains following information about
 genes in data matrix. <dl> <dt>chr</dt><dd> Factor indicating the chrosome for the gene (1 to 23, or X
	or Y</dd> <dt>arm</dt><dd> Factor indicating the chromosomal arm for the gene
	('p' or 'q')</dd> <dt>loc</dt><dd> Location of the gene in base pairs.</dd> </dl> </dd> </dl>

Format

Integrated gene copy number and expression microarray analysis
 of gastric cancer highlights potential target genes. Myllykangas et
 al., International Journal of Cancer, vol. 123,
 no. 4, pp. 817--25, 2008.

Source

Preprocessed gene copy number (aCGH) data for 51 patients in
  chromosome 17.

geneCopyNum: Gene copy number data in chromosome 17

Description

Usage

Arguments

Format

Source