pint (version 1.22.0)

get.neighboring.probes: Get neighboring probes

Description

Mainly for internal use. Pick neighboring probes for a given probes based on chromosomal locations.

Usage

get.neighboring.probes(X, Y, chr, max.dist, control.arms = TRUE, remove.duplicates = TRUE)

Arguments

X

Data object. See help(screen.cgh.mrna). For instance, geneExp from our example data set.

Y

Data object. See help(screen.cgh.mrna). For instance, geneCopyNum from our example data set.

chr

chromosome to investigate

max.dist

consider probes within this distance

control.arms

take chromosomal arm information into account

remove.duplicates

for each probe, list exactly one (the closest) match. This is useful in one-to-many matching situations where duplicates may not be desired.

Value

References

See citation("pint")

Examples

# Intended for internal use.