Learn R Programming

plantecowrap (version 1.0.4)

Enhancing Capabilities of 'plantecophys'

Description

Provides wrapping functions to add to capabilities to 'plantecophys' (Duursma, 2015, ). Key added capabilities include temperature responses of mesophyll conductance (gm, gmeso), apparent Michaelis-Menten constant for rubisco carboxylation in air (Km, Kcair),and photorespiratory CO2 compensation point (GammaStar) for fitting A-Ci or A-Cc curves for C3 plants (for temperature responses of gm, Km, & GammaStar, see Bernacchi et al., 2002, ; for theory on fitting A-Ci or A-Cc curves, see Farquhar et al., 1980; , von Caemmerer, 2000, ISBN:064306379X; Ethier & Livingston, 2004 ; and Gu et al., 2010, ). Includes the ability to fit the Arrhenius and modified Arrhenius temperature response functions (see Medlyn et al., 2002, ) for maximum rubisco carboxylation rates (Vcmax) and maximum electron transport rates (Jmax) (see Farquhar et al., 1980; ).

Copy Link

Version

Install

install.packages('plantecowrap')

Monthly Downloads

20

Version

1.0.4

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Maintainer

Joseph Stinziano

Last Published

April 3rd, 2020

Functions in plantecowrap (1.0.4)

toptfit

Fitting the Topt temperature response model
fit_topt_VJs

Fitting multiple temperature response curves
fit_topt_VJ

Fitting the temperature responses of Vcmax and Jmax
get_t_pars

Get temperature response parameters
modarrhenius

Fitting the peaked Arrhenius temperature response model
acisummary

Extracts coefficients from fitacis2
print_graphs

Printing graphs from a list of graphs
arrhenius

The Arrhenius temperature response equation
get_t_graphs

Get temperature response graphs
fitacis2

Fit A-Ci curves with custom kinetics