testReadBED

<p>Read m20 (bed, bim, and fam) under  "extdata" and compare with the content in
text file "i10.txt" converted from m20 by PLINK.</p>

Reads/write binary genotype file compatible with 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into/from a R matrix; traverse genotype data one windows of variants at a time, like apply() or a for loop; reads/writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM> into/from a R square matrix. It is best used for bringing data produced by 'PLINK' and 'GCTA' into R workflow.

Xiaoran Tong

testReadBED: Test BED Reader

Description

Usage

Arguments