kml_layer.SoilProfileCollection: Writes a list of soil profiles to KML

Description

Writes object of type "SoilProfileCollection" (a number of soil profiles with site and horizon data) to KML. Several attributes such as horizontal and vertical exaggeration can be passed via arguments.

Usage

kml_layer.SoilProfileCollection(obj, 
     var.name, var.min = 0, var.scale, 
     site_names = profile_id(obj), 
     method = c("soil_block", "depth_function")[1], 
     block.size = 100, 
     color.name, z.scale = 1, x.min, max.depth = 300,
     plot.points = TRUE, 
     LabelScale = get("LabelScale", envir = plotKML.opts) * 0.7,
     IconColor = "#ff0000ff", 
     shape = paste(get("home_url", envir = plotKML.opts), 
         "circlesquare.png", sep = ""), 
     outline = TRUE, visibility = TRUE, extrude = TRUE, tessellate = TRUE, 
     altitudeMode = "relativeToGround", camera.distance = 0.01, 
     tilt = 90, heading = 0, roll = 0, 
     metadata = NULL, html.table = NULL, plot.scalebar = TRUE,
     scalebar = paste(get("home_url", envir = plotKML.opts), 
         "soilprofile_scalebar.png", sep = ""), 
     … )

Arguments

obj

object of class "SoilProfileCollection" (package aqp)

var.name

target column name in the horizons slot

var.min

smallest value

var.scale

exaggeration in vertical dimension

site_names

site names as listed in the site table

method

visualization type (soil block or depth-function)

block.size

(optional) size of the block of land

color.name

(optional) column name carrying the color information for each horizon

z.scale

exaggeration in horizontal direction

x.min

offset in longitude direction (in decimal degrees)

max.depth

maximum height/depht of a profile in cm

plot.points

logical; specifies whether to plot horizon centres with attribute values

LabelScale

numeric; specifies size of the labels for each horizon

IconColor

colors for the labels for each horizon

shape

default icon for Google placemarks

outline

logical; specifies whether to draw outline for the soil-depth functions (or simply a line)

visibility

logical; specifies whether to make the layer visible

extrude

logical; specifies whether to extrude horizon centers

tessellate

logical; specifies whether to tessellate polygons

altitudeMode

by default relativeToGround

camera.distance

distance from a profile in arc degrees

tilt

angle between the direction of the LookAt position and the normal to the surface of the earth

heading

orientation towards north

roll

rotation about the y axis

metadata

(optional) spatial metadata for the input object

html.table

(optional) tabular content (attributes) for each horizon

plot.scalebar

logical; specifies whether to plot a scale bar next to the profile plot

scalebar

default icon for the scale bar

…

additional style arguments

Details

Horizon depths are typically expressed in cm, hence the default exaggeration factor (z.scale) is 10. It is highly recommended to turn off the terrain layer in Google Earth, otherwise Google Earth will deform the plots in areas of high relief.

References

Algorithms for Quantitative Pedology (https://CRAN.r-project.org/package=aqp)

Examples

Run this code

# NOT RUN {
## install.packages("aqp", repos="http://R-Forge.R-project.org")
library(aqp)
library(fossil)
library(plyr)
data(ca630)
## Promote to SoilProfileCollection
ca <- join(ca630$lab, ca630$site, type='inner')
depths(ca) <- pedon_key ~ hzn_top + hzn_bot
## extract site data
site(ca) <- ~ mlra + ssa + lon + lat + cntrl_depth_to_top + cntrl_depth_to_bot + sampled_taxon_name
# generate SpatialPoints
library(sp)
coordinates(ca) <- ~ lon + lat
## assign CRS data
proj4string(ca) <- "+proj=longlat +datum=NAD83"
## plot changes in base saturation by sum of cations method (pH 8.2):
kml(ca, method = "depth_function", file.name = "ca_bs_8_2.kml", 
  var.name="bs_8.2", balloon = TRUE)
## plot changes in cation exchange capacity by sum of cations method (pH 8.2):
kml(ca, file.name = "ca_CEC8_2.kml", var.name="CEC8.2", IconColor = "#ff009000")
## plot soil profile as 'block':
kml(ca, file.name = "ca_CEC8_2_block.kml", var.name="CEC8.2", balloon = TRUE)
# }