plsgenomics-deprecated

m.rirls.spls

rirls.spls

rirls.spls.tune

rirls.spls.stab

m.rirls.spls.tune

m.rirls.spls.stab

spls.adapt

spls.adapt.tune

These functions are provided for compatibility with older version of
the 'plsgenomics' package. They may eventually be completely
removed.

Routines for PLS-based genomic analyses,
implementing PLS methods for classification with
microarray data and prediction of transcription factor
activities from combined ChIP-chip analysis. The >=1.2-1
versions include two new classification methods for microarray
data: GSIM and Ridge PLS. The >=1.3 versions includes a
new classification method combining variable selection and
compression in logistic regression context: logit-SPLS; and
an adaptive version of the sparse PLS.

Ghislain Durif

plsgenomics

PLS Analyses for Genomics

plsgenomics-deprecated function

<dl><dt>...</dt>
<dd>Parameters to be passed to the modern version of the function</dd></dl>

Arguments

Deprecated function(s) in the 'plsgenomics' package — plsgenomics-deprecated

<dl>

<dt>...</dt>
<dd>Parameters to be passed to the modern version of the function</dd>

</dl>

Deprecated function(s) in the 'plsgenomics' package

`rirls.spls`	is replaced by `logit.spls`
`rirls.spls.tune`	is replaced by `logit.spls.cv`
`rirls.spls.stab`	is replaced by `logit.spls.stab`
`m.rirls.spls`	is replaced by `multinom.spls`
`m.rirls.spls.tune`	is replaced by `multinom.spls.cv`
`m.rirls.spls.stab`	is replaced by `multinom.spls.stab`
`spls.adapt`	is replaced by `spls`
`spls.adapt.tune`	is replaced by `spls.cv`

plsgenomics-deprecated: Deprecated function(s) in the 'plsgenomics' package

Description

Usage

Arguments

Details