pmc_fit

The fitting function used by pmc to generalize fitting to both geiger and ouch models.

Monte Carlo based model choice for applied phylogenetics of
continuous traits. Method described in Carl Boettiger, Graham Coop,
Peter Ralph (2012) Is your phylogeny informative? Measuring
the power of comparative methods, Evolution 66 (7)
2240-51. <doi:10.1111/j.1558-5646.2011.01574.x>.

Carl Boettiger

Phylogenetic Monte Carlo

pmc_fit function

<dl><dt>tree</dt>
<dd>a phylogenetic tree. can be ouch or ape format</dd>
<dt>data</dt>
<dd>trait data in ape or ouch format</dd>
<dt>model</dt>
<dd>the name of the model to fit,</dd>
<dt>...</dt>
<dd>whatever additional options would be provided 
to the model fit</dd></dl>

Arguments

Fit any model used in PMC — pmc_fit

<dl>

<dt>tree</dt>
<dd>a phylogenetic tree. can be ouch or ape format</dd>


<dt>data</dt>
<dd>trait data in ape or ouch format</dd>


<dt>model</dt>
<dd>the name of the model to fit,</dd>


<dt>...</dt>
<dd>whatever additional options would be provided 
to the model fit</dd>

</dl>

pmc_fit: Fit any model used in PMC

Description

Usage

Value

Arguments