point_Hobs

A matrix of estimated genotypes returned from the function <code><a rd-options="" href="/link/get_map_genotypes?package=polyfreqs&version=1.0.2" data-mini-rdoc="polyfreqs::get_map_genotypes">get_map_genotypes</a></code>.

genotypes

The ploidy level of individuals in the population (must be >= 2).

ploidy


<em>INTERNAL</em>: Estimates a posterior distribution for the per locus observed heterozygosity using the unbiased estimator of Hardy (2015) and the poterior samples of genotypes calculated by <code><a rd-options="" href="/link/polyfreqs?package=polyfreqs&version=1.0.2" data-mini-rdoc="polyfreqs::polyfreqs">polyfreqs</a></code>.


Implements a Gibbs sampling algorithm to perform Bayesian inference
on biallelic SNP frequencies, genotypes and heterozygosity (observed and
expected) in a population of autopolyploids. See the published paper in
Molecular Ecology Resources: Blischak et al. (2016) <doi:10.1111/1755-0998.12493>.

Paul Blischak

polyfreqs

Bayesian Population Genomics in Autopolyploids

point_Hobs function

A matrix of estimated genotypes returned from the function <code><a rd-options='' href='get_map_genotypes'>get_map_genotypes</a></code>.


<em>INTERNAL</em>: Estimates a posterior distribution for the per locus observed heterozygosity using the unbiased estimator of Hardy (2015) and the poterior samples of genotypes calculated by <code><a rd-options='' href='polyfreqs'>polyfreqs</a></code>.


point_Hobs: Estimation of observed heterozygosity

Description

Usage

Arguments

Value

Details

References