simple_freqs

Total reads matrix: matrix containing the total number of reads mapping to each locus for each individual.

Reference reads marix: matrix containing the number of reference reads mapping to each locus for each individual.


<code>simple_freqs</code> estimates allele frequencies based on read count ratios.


Implements a Gibbs sampling algorithm to perform Bayesian inference
on biallelic SNP frequencies, genotypes and heterozygosity (observed and
expected) in a population of autopolyploids. See the published paper in
Molecular Ecology Resources: Blischak et al. (2016) <doi:10.1111/1755-0998.12493>.

simple_freqs: Point estimation of allele frequencies based on read counts

Description

Usage

Arguments

Value