indProbs

This function computes the probability of contribution for each individual of
a given pool. Please note that this function works for a single pool and
should not be directly applied to situations where multiple pools were used.

Simulates pooled sequencing data under a variety of conditions.
Also allows for the evaluation of the average absolute difference between allele frequencies
computed from genotypes and those computed from pooled data.
Carvalho et al., (2022) <doi:10.1101/2023.01.20.524733>.

João Carvalho

poolHelper

Simulates Pooled Sequencing Genetic Data

Vítor Sousa

indProbs function

<dl><dt>np</dt>
<dd>an integer specifying how many individuals were pooled.</dd>
<dt>nSNPs</dt>
<dd>an integer indicating how many SNPs exist in the data.</dd>
<dt>pError</dt>
<dd>an integer representing the value of the error associated with
DNA pooling. This value is related with the unequal individual contribution
towards the total number of reads contributed by a single pool - the higher
the value the more unequal are the individual contributions.</dd></dl>

Arguments

Probability of contribution of each individual — indProbs

<dl>

<dt>np</dt>
<dd>an integer specifying how many individuals were pooled.</dd>


<dt>nSNPs</dt>
<dd>an integer indicating how many SNPs exist in the data.</dd>


<dt>pError</dt>
<dd>an integer representing the value of the error associated with
DNA pooling. This value is related with the unequal individual contribution
towards the total number of reads contributed by a single pool - the higher
the value the more unequal are the individual contributions.</dd>

</dl>

indProbs: Probability of contribution of each individual

Description

Usage

Value

Arguments

Examples