run_scrm

Simulates the evolution of biological sequences for a single population with
variable theta values.

Simulates pooled sequencing data under a variety of conditions.
Also allows for the evaluation of the average absolute difference between allele frequencies
computed from genotypes and those computed from pooled data.
Carvalho et al., (2022) <doi:10.1101/2023.01.20.524733>.

João Carvalho

poolHelper

Simulates Pooled Sequencing Genetic Data

Vítor Sousa

run_scrm function

<dl><dt>nDip</dt>
<dd>an integer representing the total number of diploid individuals
to simulate. Note that <code>scrm::scrm()</code> actually simulates haplotypes, so the
number of simulated haplotypes is double of this.</dd>
<dt>nloci</dt>
<dd>is an integer that represents how many independent loci should
be simulated.</dd>
<dt>theta</dt>
<dd>a value for the mutation rate assuming theta = 4Nu, where u is
the neutral mutation rate per locus.</dd></dl>

Arguments

Simulate a single population — run_scrm

<dl>

<dt>nDip</dt>
<dd>an integer representing the total number of diploid individuals
to simulate. Note that <code>scrm::scrm()</code> actually simulates haplotypes, so the
number of simulated haplotypes is double of this.</dd>


<dt>nloci</dt>
<dd>is an integer that represents how many independent loci should
be simulated.</dd>


<dt>theta</dt>
<dd>a value for the mutation rate assuming theta = 4Nu, where u is
the neutral mutation rate per locus.</dd>

</dl>

run_scrm: Simulate a single population

Description

Usage

Value

Arguments

Examples