strg2sync

Creates a string with the information for a single SNP. The information is
coded as A-count:T-count:C-count:G-count:N-count:deletion-count. Note that we
assume that the reference allele is always A and the alternative is always T.

internal

Simulates pooled sequencing data under a variety of conditions.
Also allows for the evaluation of the average absolute difference between allele frequencies
computed from genotypes and those computed from pooled data.
Carvalho et al., (2022) <doi:10.1101/2023.01.20.524733>.

João Carvalho

poolHelper

Simulates Pooled Sequencing Genetic Data

Vítor Sousa

strg2sync function

<dl><dt>reference</dt>
<dd>an integer representing the number of reads with the
reference allele.</dd>
<dt>alternative</dt>
<dd>an integer representing the number of reads with the
alternative allele.</dd></dl>

Arguments

Create sync string for a single SNP — strg2sync

<dl>

<dt>reference</dt>
<dd>an integer representing the number of reads with the
reference allele.</dd>


<dt>alternative</dt>
<dd>an integer representing the number of reads with the
alternative allele.</dd>

</dl>

strg2sync: Create sync string for a single SNP

Description

Usage

Value

Arguments