associate_dyes

This function associates dye info with fragman channel names. It was
designed to be performed on any fsa formats after final columns are
correctly imported.

Analyzing genetic data obtained from pooled samples.
This package can read in Fragment Analysis output files, process the data,
and score peaks, as well as facilitate various analyses, including cluster
analysis, calculation of genetic distances and diversity indices,
as well as bootstrap resampling for statistical inference. Specifically
tailored to handle genetic data efficiently, researchers can explore
population structure, genetic differentiation, and genetic relatedness
among samples. We updated some functions from Covarrubias-Pazaran et al.
(2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats
and referenced the following to write our genetic analysis functions:
Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008)
<doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973)
<doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006)
<doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008)
<doi:10.1111/j.1541-0420.2008.01010.x>.

Kathleen Kuesters

pooledpeaks

Genetic Analysis of Pooled Samples

Jeffrey Long

Jessica Blanton

Walter Blank

Jeffrey Kovach

Ronald Blanton

associate_dyes function

<dl><dt>x</dt>
<dd>The Output list of data frames from fsa_batch_imp.</dd>
<dt>y</dt>
<dd>The path to the folder from the current directory where the
.fsa files that will be analyzed are stored.</dd></dl>

Arguments

Associate Dye Names in Batch Import Output — associate_dyes

<dl>

<dt>x</dt>
<dd>The Output list of data frames from fsa_batch_imp.</dd>


<dt>y</dt>
<dd>The path to the folder from the current directory where the
.fsa files that will be analyzed are stored.</dd>

</dl>

associate_dyes: Associate Dye Names in Batch Import Output

Description

Usage

Value

Arguments

Examples