check_fsa_v_batch

This function analyzes .fsa files in a specified folder, providing a summary
of their version and batch information.

Analyzing genetic data obtained from pooled samples.
This package can read in Fragment Analysis output files, process the data,
and score peaks, as well as facilitate various analyses, including cluster
analysis, calculation of genetic distances and diversity indices,
as well as bootstrap resampling for statistical inference. Specifically
tailored to handle genetic data efficiently, researchers can explore
population structure, genetic differentiation, and genetic relatedness
among samples. We updated some functions from Covarrubias-Pazaran et al.
(2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats
and referenced the following to write our genetic analysis functions:
Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008)
<doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973)
<doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006)
<doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008)
<doi:10.1111/j.1541-0420.2008.01010.x>.

Kathleen Kuesters

pooledpeaks

Genetic Analysis of Pooled Samples

Jeffrey Long

Jessica Blanton

Walter Blank

Jeffrey Kovach

Ronald Blanton

check_fsa_v_batch function

<dl><dt>x</dt>
<dd>The path to the folder from the current directory where the .fsa
files that will be analyzed are stored.</dd></dl>

Arguments

Check .fsa Version and Batch Information — check_fsa_v_batch

<dl>

<dt>x</dt>
<dd>The path to the folder from the current directory where the .fsa
files that will be analyzed are stored.</dd>

</dl>

check_fsa_v_batch: Check .fsa Version and Batch Information

Description

Usage

Value

Arguments

Examples