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poppr (version 2.6.1)

plot_filter_stats: Plot the results of filter_stats

Description

Plot the results of filter_stats

Usage

plot_filter_stats(x, fstats, distmat, cols = NULL, nclone = NULL,
  breaks = NULL)

Arguments

x

a genlight of genind object

fstats

the list passed from filter_stats

distmat

a distance matrix passed from filter_stats

cols

colors to use for each algorithm (defaults to RColorBrewer set 1)

nclone

Value

a plot depicting how many MLLs are collapsed as the genetic distance increases for each algorithm.

References

ZN Kamvar, JC Brooks, and NJ Gr<U+00FC>nwald. 2015. Supplementary Material for Frontiers Plant Genetics and Genomics 'Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality'. DOI: 10.5281/zenodo.17424

Kamvar ZN, Brooks JC and Gr<U+00FC>nwald NJ (2015) Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Front. Genet. 6:208. doi: 10.3389/fgene.2015.00208

See Also

filter_stats