poppr (version 2.9.6)

as.snpclone: Create a snpclone object from a genlight object.

Description

Wrapper for snpclone initializer.

Usage

as.snpclone(x, ..., parallel = FALSE, n.cores = NULL, mlg, mlgclass = TRUE)

Arguments

x

a genlight or snpclone object

...

arguments to be passed on to the genlight constructor. These are not used if x is not missing.

parallel

should the parallel package be used to construct the object?

n.cores

how many cores should be utilized? See documentation for genlight for details.

mlg

a vector of multilocus genotypes or an object of class MLG for the new snpclone object.

mlgclass

if TRUE (default), the multilocus genotypes will be represented as an MLG object.

Author

Zhian N. Kamvar

Examples

(x <- as.snpclone(glSim(100, 1e3, ploid=2)))
if (FALSE) {
# Without parallel processing
system.time(x <- as.snpclone(glSim(1000, 1e5, ploid=2)))

# With parallel processing... doesn't really save you much time.
system.time(x <- as.snpclone(glSim(1000, 1e5, ploid=2, parallel = TRUE), 
                             parallel = TRUE))
}