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poptrend

poptrend is an R package for estimating simple population trends from count survey data using Generalized Additive Mixed Models (GAMM). The package uses mgcv as the model fitting engine and provides methods for plotting trends, and computing indices and estimates of population change.

Installation

CRAN version

The main version of poptrend is available from CRAN and can be installed from R by running

install.packages("poptrend")

Development version

Alternatively, the most recent development version can be installed directly from Github. To do so, first install the devtools package:

install.packages("devtools")

Then run:

library(devtools)
install_github("jknape/poptrend")

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Version

Install

install.packages('poptrend')

Monthly Downloads

164

Version

0.2.0

License

GPL-3

Issues

Pull Requests

Stars

Forks

Maintainer

Jonas Knape

Last Published

November 22nd, 2023

Functions in poptrend (0.2.0)

greenfinch

Data for greenfinch from the Swedish Bird Survey.
change

Compute the change in the population over a time interval.
poptrend

Analyze population trends from survey count data.
ptrend

Fit a smooth or linear trend to count survey data.
simTrend

Simulate population survey data.
hessBootstrap

Compute bootstrap confidence intervals based on sampling from the variance-covariance matrix.
plot.trend

Plot an estimated trend.
print.trend

Print a trend object.
checkFit

Check goodness of fit of a trend model.
trend

Define a trend component.
summary.trend

Summary of trend estimates
goldcrest

Data for goldcrest from the Swedish Bird Survey.