prabclus (version 2.3-4)

build.ext.nblist: Internal: generates neighborhood list for diploid loci

Description

This is for use in alleleinit. Given a neighborhood list of individuals, a new neighborhood list is generated in which there are two entries for each individual (entry 1 and 2 refer to individual one, 3 and 4 to individual 2 and so on). Neighborhoods are preserved and additionally the two entries belonging to the same individual are marked as neighbors.

Usage

build.ext.nblist(neighbors,n.individuals=length(neighbors))

Value

list with 2*n.inidividuals vectors of integers as described above.

Arguments

neighbors

list of integer vectors, where each vector contains the neighbors of an individual.

n.individuals

integer. Number of individuals.

Author

Christian Hennig https://www.unibo.it/sitoweb/christian.hennig/en

See Also

alleleinit

Examples

  data(veronica)
  vnb <- coord2dist(coordmatrix=veronica.coord[1:20,], cut=20,
    file.format="decimal2",neighbors=TRUE)
  build.ext.nblist(vnb$nblist)