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Tests for independence between a clustering and another grouping of species. This is simply an interface to chisq.test.
chisq.test
comp.test(cl,spg)
Output of chisq.test.
a vector of integers. Clustering of species (may be taken from prabclust).
prabclust
a vector of integers of the same length, groups of species.
Christian Hennig christian.hennig@unibo.it https://www.unibo.it/sitoweb/christian.hennig/en
chisq.test with simulated p-value is used.
Hausdorf, B. and Hennig, C. (2003) Biotic Element Analysis in Biogeography. Systematic Biology 52, 717-723.
chisq.test, prabclust.
set.seed(1234) g1 <- c(rep(1,34),rep(2,12),rep(3,15)) g2 <- sample(3,61,replace=TRUE) comp.test(g1,g2)
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