prettyR (version 1.0-4)

htmlize: Read an R script and write HTML output

Description

Produces HTML output from an R script.

Usage

htmlize(Rfile,HTMLbase,HTMLdir,title,
 bgcolor="#dddddd",echo=TRUE,do.nav=TRUE,...)

Arguments

Rfile

The R script file from which to read the commands.

HTMLbase

The base name for the HTML files (see Details).

HTMLdir

The directory in which to write the HTML output.

title

The title of the HTML page and the headings for the frames.

bgcolor

The background color for the frames.

echo

Whether to include ("echo") the commands in the listing.

do.nav

Whether to have a navigation window.

...

Additional arguments - currently ignored.

Value

• nil

Details

htmlize allows the user to produce a basic HTML listing from an existing R script. The script must already run correctly with source. If there is any graphic output, the script must contain the necessary commands to set up the graphic devices. Note that only TIFF, GIF, BMP, JPEG and PNG graphic images are generally viewable in HTML browsers. The last two are probably the most reliable, but see their help pages for more details. The graphic files will be linked to the HTML listing page so that they should be interleaved with text output and commands. If do.nav is TRUE, three files will be output. The first will be named HTMLbase.html, where HTMLbase is whatever string has been passed as that argument. If that argument is missing, the function will attempt to munge the Rfile argument into a base name. This file is an "index" file that sets up the HTML frameset. The second file will be named HTMLbase_nav.html and will be dispayed at the left side of the HTML output as a "navigation" list using the commands as names. Commands longer than 20 characters will be truncated. The third file, named HTMLbase_list.html, contains the program listing. All three files will be written in HTMLdir. If this is missing, the path of Rfile will be used. If do.nav is FALSE, only one file will be written. It will have the same content as the HTMLbase_list.html file except without the name tags for navigation and it will be named HTMLbase.html. Commands that create or alter connections, such as sink are "forbidden", not evaluated and marked as comments in the listing. This prevents such commands from altering the connections necessary to write the HTML files.

Examples

rcon<-file("test.R","w")
 cat("test.df<-data.frame(a=factor(sample(LETTERS[1:4],100,TRUE)),
",
  file=rcon)
 cat("b=sample(1:4,100,TRUE),c=rnorm(100),d=rnorm(100))
",file=rcon)
 cat("describe(test.df)
",file=rcon)
 cat("print(freq(test.df$a))
",file=rcon)
 cat("xtab(a~b,test.df)
",file=rcon)
 cat("brkdn(c~b,test.df)
",file=rcon)
 cat("png("hista.png")
hist(test.df$b)
dev.off()
",file=rcon)
 cat("png("plotcd.png")
plot(test.df$c,test.df$d)
dev.off()
",file=rcon)
 close(rcon)
 # call htmlize with minimal arguments
 htmlize("test.R")
 # if you want to see the output, use the following line
 # system(paste(options("browser")," file:",getwd(),"/test.html",sep="",collapse=""))
 # to clean up, use the following line
 # system("rm test.R test.html test_nav.html test_list.html hista.png plotcd.png")