plot-methods-coda

densplot-methods

densplot,prev-method

traceplot-methods

traceplot,prev-method

gelman.plot-methods

gelman.plot,prev-method

autocorr.plot-methods

autocorr.plot,prev-method

An object of class <code>prev</code>

Should fixed parameters be excluded from plotting?
 defaults to <code>TRUE</code>

exclude_fixed

Which chain to plot in <code>autocorr.plot</code>;
 defaults to 1

chain

Other arguments to pass to the specific plot function.

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Different plotting functions from package coda have been
 made available as method to class <code>prev</code>

methods

The prevalence package provides Frequentist and Bayesian methods for prevalence assessment studies. IMPORTANT: the truePrev functions in the prevalence package call on JAGS (Just Another Gibbs Sampler), which therefore has to be available on the user's system. JAGS can be downloaded from <https://mcmc-jags.sourceforge.io/>.

Brecht Devleesschauwer

prevalence

Tools for Prevalence Assessment Studies

Paul Torgerson

Johannes Charlier

Bruno Levecke

Nicolas Praet

Sophie Roelandt

Suzanne Smit

Pierre Dorny

Dirk Berkvens

Niko Speybroeck

plot-methods-coda function

<dl class="dl-horizontal">
 <dt><code>signature(x = "prev")</code></dt><dd>Show <a rd-options="coda:densplot" href="/link/density?package=prevalence&version=0.4.1&to=coda%3Adensplot" data-mini-rdoc="coda:densplot::density">density</a>, <a rd-options="coda:traceplot" href="/link/trace?package=prevalence&version=0.4.1&to=coda%3Atraceplot" data-mini-rdoc="coda:traceplot::trace">trace</a>,
	 <a rd-options="coda:gelman.plot" href="/link/Brooks-Gelman-Rubin?package=prevalence&version=0.4.1&to=coda%3Agelman.plot" data-mini-rdoc="coda:gelman.plot::Brooks-Gelman-Rubin">Brooks-Gelman-Rubin</a> and
	 <a rd-options="coda:autocorr.plot" href="/link/autocorrelation?package=prevalence&version=0.4.1&to=coda%3Aautocorr.plot" data-mini-rdoc="coda:autocorr.plot::autocorrelation">autocorrelation</a> plots.</dd>
 </dl>

Methods

Plotting functions from package coda — plot-methods-coda

<dl class='dl-horizontal'>
 <dt><code>signature(x = "prev")</code></dt><dd>Show <a rd-options='coda:densplot' href='density'>density</a>, <a rd-options='coda:traceplot' href='trace'>trace</a>,
	 <a rd-options='coda:gelman.plot' href='Brooks-Gelman-Rubin'>Brooks-Gelman-Rubin</a> and
	 <a rd-options='coda:autocorr.plot' href='autocorrelation'>autocorrelation</a> plots.</dd>
 </dl>

plot-methods-coda: Plotting functions from package coda

Description

Usage

Arguments

Methods

See Also