primer (version 1.2.0)

SIRmod: The S-I-R Epidemilogical Disease Model

Description

The S-I-R epidemiological disease model with births and deaths (population dynamics), for use with ode in the deSolve package. This model uses scaled transmission, where z controls the degree of density- and frequency-dependence.

Usage

SIRmod(t, y, p)

Arguments

t

times points for which values will be returned

y

the vector of disease states of hosts (S, I, R)

p

a vector of parameters

Value

Returns of list of one component (required by ode).

Details

The user does not put these directly into this function, but rather uses ode in the deSolve package.

References

Ellner, S.P. and Guckenheimer, J. (2006) Dynamic Models in Biology, Princeton University Press.

Kermack, W.O. and McCormick, W.G. (1927) A contribution to the mathematical theory of epidemics. Proceedings of the Royal Society, Series A, 115, 700--721.

Stevens, M.H.H. (2009) A Primer of Ecology with R, Use R! Series. Springer.

See Also

ross, SIRf, SIRd

Examples

# NOT RUN {
library(deSolve)
N <- 10^6; R <- 0; I <- 1; S <- N - I - R
g <- 1/(13/365); b <- 1/50; z <- 0;
age <- 5; R0 <- 1 + 1/(b*age)
B <- R0 * (g + b) / N
parms <- c(B = B, g = g, b = b, mu=b)
years <- seq(0,30, by=.1)
SIR.out <- data.frame(ode(c(S=S,I=I,R=R), years, SIRmod, parms, hmax=.01))
matplot(SIR.out[,1], sqrt(SIR.out[,-1]), type='l',
        lty=1:3, ylab="sqrt(No. of Individuals)", xlab='Years')
legend('right', c('S','I','R'), lty=1:3, col=1:3, bty='n')

# }