Calls clustal omega to align a set of sequences of class DNAbin. Run without any arguments to see all the options you can pass to the command line clustal omega.
clustalo(x, exec = "clustalo", quiet = TRUE, original.ordering = TRUE, ...)an object of class 'DNAbin'
a character string with the name or path to the program
whether to supress output to stderr or stdout
use the original ordering of the sequences
additional arguments passed to the command line clustalo