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pro (version 0.1.1)

Point-Process Response Model for Optogenetics

Description

Optogenetics is a new tool to study neuronal circuits that have been genetically modified to allow stimulation by flashes of light. This package implements the methodological framework, Point-process Response model for Optogenetics (PRO), for analyzing data from these experiments. This method provides explicit nonlinear transformations to link the flash point-process with the spiking point-process. Such response functions can be used to provide important and interpretable scientific insights into the properties of the biophysical process that governs neural spiking in response to optogenetic stimulation.

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Version

Install

install.packages('pro')

Monthly Downloads

109

Version

0.1.1

License

GPL-2

Maintainer

Last Published

September 17th, 2015

Functions in pro (0.1.1)

model.pro

Model matrix for point-process responses
sim.lif

Simulate optogenetic stimulation on a leaky-integrate-fire neuron
pro

Fit the PRO model