proftools (version 0.99-3)

plotProfileCallGraph: Plot Call Graph for Rprof Profile Data

Description

Uses the graph and Rgraphviz packages to plot a call graph for profile data produced by Rprof.

Usage

plotProfileCallGraph(pd, layout = "dot",
                     score = c("none", "total", "self"),
                     transfer = function(x) x, nodeColorMap = NULL,
                     edgeColorMap = NULL, mergeCycles = FALSE,
                     edgesColored = FALSE, rankDir = c("TB", "LR"),
                     nodeDetails = FALSE, edgeDetails = FALSE,
                     nodeSizeScore = c("none", "total", "self"),
                     edgeSizeScore = c("none", "total"),
                     shape = "ellipse", style, GC = TRUE,
                     maxnodes = NA, total.pct = 0, ...)

Arguments

pd

profile data as returned by readProfileData.

layout

The layout method to use: One of "dot", "neato", and "twopi".

score

character string specifying whether to use total time or self time for coloring nodes/edges; no color used if missing.

transfer

function; maps score values in unit interval to unit interval

nodeColorMap,edgeColorMap

character vectors of color specifications as produced by rainbow; transfer of score is mapped to color

mergeCycles

logical; whether to merge each cycle of recursion into a single node

edgesColored

logical; whether to color edges

rankDir

The direction that the plot is laid out in, one of either "TB" for Top-to-Bottom or "LR" for Left-to-Right. The default value is "LR". This argument is only useful for dot layouts.

nodeDetails,edgeDetails

logical; whether count information should be shown.

nodeSizeScore

character; value to encode in the size of the nodes.

edgeSizeScore

character; value to encode in the width of the edges.

shape

character; node shape.

style

named list of values for arguments score through layout to use if not explicitly supplied.

…

additional arguments for the graphNEL plot method.

GC

logical; include GC information or not.

maxnodes

integer; maximal number of nodes to use; nodes with lower total hit counts are dropped.

total.pct

numeric; if positive, nodes with hit percentages below this level are dropped.

Value

Used for side effect.

Details

Color is used to encode the fraction of total or self time spent in each function or call. The scores used correspond to the values in the printed representation produced by printProfileCallGraph. For now, see the gprof manual for further details. The color encoding for a score s and a color map m is m[ceiling(length(m) * transfer(s))]

A style can be specified to set options to a set of cvalues that work well together.

References

User manual for gprof, the GNU profiler.

Graphviz: https://graphviz.gitlab.io/download/

See Also

Rprof, summaryRprof, readProfileData, flatProfile, profileCallGraph2Dot printProfileCallGraph plain.style google.style

Examples

# NOT RUN {
pd <- readProfileData(system.file("samples", "glmEx.out", package="proftools"))
plotProfileCallGraph(pd)
plotProfileCallGraph(pd, score = "none")
plotProfileCallGraph(pd, style = plain.style, score = "total")
# }