massDeviationPlot

<code>massDeviationPlot</code> computes the mass deviation of a data set having 
the list attributes <code>pepmass</code> and <code>peptideSequence</code>.

Helps with quality checks, visualizations
and analysis of mass spectrometry data, coming from proteomics
experiments. The package is developed, tested and used at the Functional
Genomics Center Zurich <https://fgcz.ch>. We use this package
mainly for prototyping, teaching, and having fun with proteomics data.
But it can also be used to do data analysis for small scale data sets.

Christian Panse

protViz

Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics

Jonas Grossmann

Simon Barkow-Oesterreicher

massDeviationPlot function

<dl>
 <dt>data</dt>
<dd>an R data object as it can be obtained by <code>mascotDat2RData.pl</code></dd> <dt>sub</dt>
<dd>a sub title for the plot</dd>
</dl>

Arguments

Christian Panse 2012-2013;

Author

<code>massDeviationPlot</code> computes the mass deviation of a data set having 
the list attributes <code>pepmass</code> and <code>peptideSequence</code>.

Mass Deviation Plot — massDeviationPlot

<dl>


 <dt>data</dt>
<dd>an R data object as it can be obtained by <code>mascotDat2RData.pl</code></dd>

 <dt>sub</dt>
<dd>a sub title for the plot</dd>


</dl>

massDeviationPlot: Mass Deviation Plot

Description

Usage

Arguments

Author

Details

References

Examples