protiq (version 1.2)

checkInputData: Generic function to check if the input data fulfills all requirements for protein inference with MIPGEM or quantification with SCAMPI.

Description

The dataframes are checked for completeness: are all needed input variables provided? Furthermore, the numbering of the dataframes is checked and inconsistencies are reported.

Usage

checkInputData(scampiData, ...)

Arguments

scampiData

object of class scampi or mipgem

...

further arguments to be passed to the methods

Details

Currently only the functions for quantification, related to objects of the class scampi, are available.

See Also

checkInputData.scampi for details about the checks performed on scampi objects

Examples

data("leptoSRM")
dataChecked <- checkInputData(scampi(peptides=leptoSRMpeptides,
                                     proteins=leptoSRMproteins, 
                                     edgespp=leptoSRMedgespp),
                              rescaling=FALSE)