protiq (version 1.2)

preprocessInputData: Generic function to preprocess the input data for protein inference with MIPGEM or quantification with SCAMPI to speed up further computations.

Description

Quantities which do not depend on the parameter values are precomputed and stored to be accessed quickly in further computations.

Usage

preprocessInputData(scampiData, ...)

Arguments

scampiData

object of class scampi or mipgem

...

further arguments to be passed to the methods

Details

Currently only the functions for quantification, related to objects of the class scampi, are available.

See Also

preprocessInputData.scampi for details about the preprocessing performed on scampi objects

Examples

data("leptoSRM")
dataChecked <- checkInputData(scampi(peptides=leptoSRMpeptides, 
                                     proteins=leptoSRMproteins, 
                                     edgespp=leptoSRMedgespp),
                              rescaling=FALSE)
dataPrepro <- preprocessInputData(dataChecked)