AAMetaInfo

This dataset includes the meta information of
the 20 amino acids used for the 2D and 3D descriptor
calculation in this package. Each column represents:<dl>
 <dt><code>AAName</code></dt>
<dd>Amino acid name</dd> <dt><code>Short</code></dt>
<dd>One-letter representation</dd> <dt><code>Abbreviation</code></dt>
<dd>Three-letter representation</dd> <dt><code>mol</code></dt>
<dd>SMILES representation</dd> <dt><code>PUBCHEM_COMPOUND_CID</code></dt>
<dd>PubChem CID for the amino acid</dd> <dt><code>PUBCHEM_LINK</code></dt>
<dd>PubChem link for the amino acid</dd>
</dl>

Comprehensive toolkit for generating various numerical
features of protein sequences described in Xiao et al. (2015)
<DOI:10.1093/bioinformatics/btv042>. For full functionality,
the software 'ncbi-blast+' is needed, see
<https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>
for more information.

Nan Xiao

protr

Generating Various Numerical Representation Schemes for Protein
Sequences

Qing-Song Xu

Dong-Sheng Cao

Sebastian Mueller

AAMetaInfo function

This dataset includes the meta information of
the 20 amino acids used for the 2D and 3D descriptor
calculation in this package. Each column represents:<dl>
 <dt><code>AAName</code></dt>
<dd>Amino acid name</dd>

 <dt><code>Short</code></dt>
<dd>One-letter representation</dd>

 <dt><code>Abbreviation</code></dt>
<dd>Three-letter representation</dd>

 <dt><code>mol</code></dt>
<dd>SMILES representation</dd>

 <dt><code>PUBCHEM_COMPOUND_CID</code></dt>
<dd>PubChem CID for the amino acid</dd>

 <dt><code>PUBCHEM_LINK</code></dt>
<dd>PubChem link for the amino acid</dd>


</dl>

AAMetaInfo: Meta Information for the 20 Amino Acids

Description

Arguments

Examples