split_metal_name

Converts a vector of metal names extracted from the <code>ft_metal</code> column
obtained with <code>fetch_uniprot</code> to a pattern that can be used to search for corresponding
ChEBI IDs. This is used as a helper function for other functions.

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.

Jan-Philipp Quast

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools

Dina Schuster

ETH Zurich 

split_metal_name function

<dl><dt>metal_names</dt>
<dd>a character vector containing names of metals and metal containing molecules.</dd></dl>

Arguments

Convert metal names to search pattern — split_metal_name

<dl>

<dt>metal_names</dt>
<dd>a character vector containing names of metals and metal containing molecules.</dd>

</dl>

split_metal_name: Convert metal names to search pattern

Description

Usage

Value

Arguments