protti (version 0.9.1)

fetch_go: Fetch gene ontology information from geneontology.org

Description

Fetches gene ontology data from geneontology.org for the provided organism ID.

Usage

fetch_go(organism_id)

Value

A data frame that contains gene ontology mappings to UniProt or SGD IDs. The original file is a .GAF file. A detailed description of all columns can be found here: http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/

Arguments

organism_id

a character value NCBI taxonomy identifier of an organism (TaxId). Possible inputs inlude only: "9606" (Human), "559292" (Yeast) and "83333" (E. coli).

Examples

# \donttest{
go <- fetch_go("9606")

head(go)
# }