metal_chebi_uniprot

<p>A list that contains all ChEBI IDs that appear in UniProt and that contain either a metal atom
in their formula or that do not have a formula but the ChEBI term is related to metals.
This was last updated on the 19/02/24.</p>

datasets

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.

Jan-Philipp Quast

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools

Dina Schuster

ETH Zurich 

metal_chebi_uniprot function

<p>A data.frame containing information retrieved from ChEBI using <code>fetch_chebi(stars = c(2, 3))</code>,
filtered using symbols in the <code>metal_list</code> and manual annotation of metal related ChEBI IDs that do not
contain a formula.</p>

metal_chebi_uniprot: List of metal-related ChEBI IDs in UniProt

Description

Usage

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Format