ptm (version 0.2.2)

abundance: Protein Abundance Data

Description

Returns data regarding the abundance of a given protein.

Usage

abundance(id, ...)

Arguments

id

the UniProt identifier of the protein of interest.

...

either 'jarkat' or 'hela' if required.

Value

A numeric value for the abundance, expressed a parts per million (ppm), of the requested protein.

Details

For human proteins, in addition to the abundance in the whole organism (by default), the abundance found in Jurkat or HeLa cells can be requested. The data are obtained from the PaxDb.

References

Wang et al. Proteomics 2015, 10.1002/pmic.201400441. (PMID: 25656970)

Examples

# NOT RUN {
abundance(id = 'A0AVT1')
abundance(id = 'A0AVT1', 'jurkat')
abundance(id = 'A0AVT1', 'hela')
# }