ptm (version 0.2.2)

compute.dssp: Compute and Return a DSSP File

Description

Computes and returns a DSSP file.

Usage

compute.dssp(pdb, destfile = './')

Arguments

pdb

is either a PDB id, or the path to a pdb file.

destfile

a character string with the path where the DSSP file is going to be saved.

Value

an online computed dssp file that is saved at the indicated location.

Details

A drawback of this function is that it depends on DSSP's server and in occasions it can take a long time to process the request.

References

Touw et al (2015) Nucl. Ac. Res. 43(Database issue): D364-D368 (PMID: 25352545).

See Also

download.dssp(), parse.dssp(), mkdssp() and acc.dssp()

Examples

# NOT RUN {
compute.dssp(pdb = '3cwm', destfile = './')
# }