ptm (version 0.2.2)

gl.scan: Scan a Protein in Search of OGlcNAc Sites

Description

Scans the indicated protein in search of glycosylation sites.

Usage

gl.scan(up_id, db = 'all')

Arguments

up_id

a character string corresponding to the UniProt ID.

db

the database where to search. It should be one among 'PSP', 'dbPTM', 'all'.

Value

Returns a dataframe where each row corresponds to a modifiable residue.

Details

If db = 'all' has been selected, it may happen that the same residue appears in several rows if it is present in different databases.

References

Hornbeck et al. Nucleic Acids Res. 2019 47:D433-D441, (PMID: 30445427).

Huang et al. Nucleic Acids Res. 2019 47:D298-D308, (PMID: 30418626).

See Also

meto.scan(), ac.scan(), me.scan(), ub.scan(), su.scan(), p.scan(), sni.scan(), ni.scan(), ptm.scan(), reg.scan(), dis.scan()

Examples

# NOT RUN {
gl.scan('P08670', db = 'PSP')
# }