ptm (version 0.2.2)

pdb.pep: Check Whether an Oligopeptide is Found in the PDB

Description

Checks whether a given oligopeptide is resolved in the PDB.

Usage

pdb.pep(pep, pdb)

Arguments

pep

character string corresponding to the sequence of the oligopeptide.

pdb

the 4-letter PDB identifier.

Value

The functions returns TRUE if peptide is found in the PDB sequence (and gives the starting position), and FALSE otherwise.

Details

The oligopeptide sequence must be given in one letter amino acid code.

See Also

pdb.res()

Examples

# NOT RUN {
pdb.pep(pep = 'IVKGRASLTQEQ' , pdb = '2aw5')
# }